HL_5MRE_060

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUAUACUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_060 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.1211

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MRE|1|A|U|3135
5MRE|1|A|U|3136
5MRE|1|A|A|3137
5MRE|1|A|U|3138
5MRE|1|A|A|3139
5MRE|1|A|C|3140
5MRE|1|A|U|3141
5MRE|1|A|A|3142
5MRE|1|A|A|3143

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain L

bL17m

Chain W

bL32m