HL_5MRE_071

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_071 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.1527

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MRE|1|aa|C|383
5MRE|1|aa|G|384
5MRE|1|aa|A|385
5MRE|1|aa|A|386
5MRE|1|aa|A|387
5MRE|1|aa|G|388

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 22

mS41

Chain PP

bS16m