HL_5MRE_090

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUUUUU

Length

6 nucleotides

Bulged bases

5MRE|1|aa|U|1350, 5MRE|1|aa|U|1351, 5MRE|1|aa|U|1353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_090 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2126

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

5MRE|1|aa|A|1349
5MRE|1|aa|U|1350
5MRE|1|aa|U|1351
5MRE|1|aa|U|1352
5MRE|1|aa|U|1353
5MRE|1|aa|U|1354

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain WW

mS29