HL_5MRE_091

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUGAAAUUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_091 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1565

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MRE|1|aa|C|1382
5MRE|1|aa|U|1383
5MRE|1|aa|G|1384
5MRE|1|aa|A|1385
5MRE|1|aa|A|1386
5MRE|1|aa|A|1387
5MRE|1|aa|U|1388
5MRE|1|aa|U|1389
5MRE|1|aa|C|1390
5MRE|1|aa|G|1391

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain MM

uS13m

Chain NN

uS14m

Chain SS

uS19m

Chain XX

mS33