HL_5MRE_097

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUUAAGAGUU

Length

10 nucleotides

Bulged bases

5MRE|1|aa|G|270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_097 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.5375

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MRE|1|aa|A|263
5MRE|1|aa|U|264
5MRE|1|aa|U|265
5MRE|1|aa|A|266
5MRE|1|aa|A|267
5MRE|1|aa|G|268
5MRE|1|aa|A|269
5MRE|1|aa|G|270
5MRE|1|aa|U|271
5MRE|1|aa|U|272

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain OO

uS15m

Chain QQ

uS17m

Chain VV

mS26