HL_5MRF_013

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

CAAUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_013 not in the Motif Atlas

Geometric match to HL_8DP3_003

Geometric discrepancy: 0.3633

The information below is about HL_8DP3_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MRF|1|A|C|505
5MRF|1|A|A|506
5MRF|1|A|A|507
5MRF|1|A|U|508
5MRF|1|A|A|509
5MRF|1|A|A|510
5MRF|1|A|G|511

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 7

mL49

Chain D

uL4m

Chain J

uL15m