HL_5MRF_030

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

CGACUCAG

Length

8 nucleotides

Bulged bases

5MRF|1|A|U|1568, 5MRF|1|A|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_030 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0751

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5MRF|1|A|C|1564
5MRF|1|A|G|1565
5MRF|1|A|A|1566
5MRF|1|A|C|1567
5MRF|1|A|U|1568
5MRF|1|A|C|1569
5MRF|1|A|A|1570
5MRF|1|A|G|1571

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 3

mL41

Chain O

uL22m

Chain Y

bL34m