HL_5MRF_032

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

GUUAGUC

Length

7 nucleotides

Bulged bases

5MRF|1|A|U|1645, 5MRF|1|A|U|1648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_032 not in the Motif Atlas

Homologous match to HL_4WF9_040

Geometric discrepancy: 0.2728

The information below is about HL_4WF9_040

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

5MRF|1|A|G|1643
5MRF|1|A|U|1644
5MRF|1|A|U|1645
5MRF|1|A|A|1646
5MRF|1|A|G|1647
5MRF|1|A|U|1648
5MRF|1|A|C|1649

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain B

uL2m

Chain OO

uS15m

Chain aa

Small subunit ribosomal RNA; SSU rRNA