HL_5MRF_074

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AAUAAUGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_074 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.377

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5MRF|1|aa|A|521
5MRF|1|aa|A|522
5MRF|1|aa|U|523
5MRF|1|aa|A|524
5MRF|1|aa|A|525
5MRF|1|aa|U|526
5MRF|1|aa|G|527
5MRF|1|aa|A|528
5MRF|1|aa|U|529

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 22

mS41

Chain 66

mS45

Chain PP

bS16m