HL_5MRF_083

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_083 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.1215

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MRF|1|aa|A|962
5MRF|1|aa|G|963
5MRF|1|aa|C|964
5MRF|1|aa|A|965
5MRF|1|aa|A|966
5MRF|1|aa|U|967

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain OO

uS15m