HL_5MRF_097

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AUUAAGAGUU

Length

10 nucleotides

Bulged bases

5MRF|1|aa|G|270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_097 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.5373

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MRF|1|aa|A|263
5MRF|1|aa|U|264
5MRF|1|aa|U|265
5MRF|1|aa|A|266
5MRF|1|aa|A|267
5MRF|1|aa|G|268
5MRF|1|aa|A|269
5MRF|1|aa|G|270
5MRF|1|aa|U|271
5MRF|1|aa|U|272

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain OO

uS15m

Chain QQ

uS17m

Chain VV

mS26