HL_5MSG_001

3D structure

PDB id

5MSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Influenza B polymerase bound to vRNA promoter and capped RNA primer

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UAGUAA

Length

6 nucleotides

Bulged bases

5MSG|1|V|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MSG_001 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.0928

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

5MSG|1|V|U|3
5MSG|1|V|A|4
5MSG|1|V|G|5
5MSG|1|V|U|6
5MSG|1|V|A|7
5MSG|1|V|A|8

Current chains

Chain V

RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')

Nearby chains

Chain A

Polymerase acidic protein

Chain B

RNA-directed RNA polymerase catalytic subunit