HL_5NCO_007

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5NCO|1|A|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_007 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1085

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NCO|1|A|G|194
5NCO|1|A|A|195
5NCO|1|A|A|196
5NCO|1|A|A|197
5NCO|1|A|C|198
5NCO|1|A|A|199
5NCO|1|A|U|200
5NCO|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28