HL_5NCO_012

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5NCO|1|A|G|329, 5NCO|1|A|A|330, 5NCO|1|A|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1166

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

5NCO|1|A|G|327
5NCO|1|A|U|328
5NCO|1|A|G|329
5NCO|1|A|A|330
5NCO|1|A|C|331
5NCO|1|A|A|332
5NCO|1|A|G|333
5NCO|1|A|C|334
5NCO|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24