HL_5NCO_020

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

5NCO|1|A|U|646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_020 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.3337

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5NCO|1|A|U|641
5NCO|1|A|U|642
5NCO|1|A|A|643
5NCO|1|A|A|644
5NCO|1|A|C|645
5NCO|1|A|U|646
5NCO|1|A|G|647

Current chains

Chain A

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35