HL_5NCO_021

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1993

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NCO|1|A|G|712
5NCO|1|A|G|713
5NCO|1|A|U|714
5NCO|1|A|A|715
5NCO|1|A|A|716
5NCO|1|A|C|717
5NCO|1|A|A|718
5NCO|1|A|C|719

Current chains

Chain A

23S rRNA

Nearby chains