HL_5NCO_023

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5NCO|1|A|A|781, 5NCO|1|A|G|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_023 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.1212

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|U|779
5NCO|1|A|G|780
5NCO|1|A|A|781
5NCO|1|A|A|782
5NCO|1|A|A|783
5NCO|1|A|G|784
5NCO|1|A|G|785

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2