HL_5NCO_037

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5NCO|1|A|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_037 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.1782

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5NCO|1|A|C|1533
5NCO|1|A|U|1534
5NCO|1|A|A|1535
5NCO|1|A|C|1536
5NCO|1|A|G|1537
5NCO|1|A|G|1538

Current chains

Chain A

23S rRNA

Nearby chains

Chain i

Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein

Chain k

Signal sequence (1A9L)