HL_5ND8_052

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5ND8|1|A|A|2295, 5ND8|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1072

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5ND8|1|A|C|2291
5ND8|1|A|U|2292
5ND8|1|A|A|2293
5ND8|1|A|A|2294
5ND8|1|A|A|2295
5ND8|1|A|A|2296
5ND8|1|A|G|2297
5ND8|1|A|G|2298
5ND8|1|A|U|2299
5ND8|1|A|A|2300
5ND8|1|A|A|2301
5ND8|1|A|C|2302
5ND8|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27