HL_5ND8_053

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

5ND8|1|A|U|2332, 5ND8|1|A|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_053 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2886

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5ND8|1|A|G|2330
5ND8|1|A|G|2331
5ND8|1|A|U|2332
5ND8|1|A|U|2333
5ND8|1|A|G|2334
5ND8|1|A|G|2335
5ND8|1|A|A|2336
5ND8|1|A|A|2337
5ND8|1|A|A|2338
5ND8|1|A|U|2339
5ND8|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L5