HL_5ND8_057

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

5ND8|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_057 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1267

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5ND8|1|A|C|2431
5ND8|1|A|G|2432
5ND8|1|A|C|2433
5ND8|1|A|A|2434
5ND8|1|A|U|2435
5ND8|1|A|G|2436
5ND8|1|A|G|2437
5ND8|1|A|A|2438
5ND8|1|A|A|2439
5ND8|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L15