HL_5ND8_077

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1985

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5ND8|1|a|A|328
5ND8|1|a|A|329
5ND8|1|a|C|330
5ND8|1|a|U|331
5ND8|1|a|G|332
5ND8|1|a|A|333
5ND8|1|a|G|334
5ND8|1|a|A|335
5ND8|1|a|C|336
5ND8|1|a|A|337
5ND8|1|a|C|338
5ND8|1|a|G|339
5ND8|1|a|G|340
5ND8|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20