HL_5ND9_013

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

5ND9|1|A|G|432, 5ND9|1|A|A|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|A|427
5ND9|1|A|G|428
5ND9|1|A|C|429
5ND9|1|A|A|430
5ND9|1|A|C|431
5ND9|1|A|G|432
5ND9|1|A|U|433
5ND9|1|A|G|434
5ND9|1|A|A|435
5ND9|1|A|A|436
5ND9|1|A|A|437
5ND9|1|A|U|438
5ND9|1|A|U|439

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28