HL_5ND9_023
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 5ND9|1|A|U|792, 5ND9|1|A|A|796, 5ND9|1|A|A|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ND9_023 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1577
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5ND9|1|A|C|789
5ND9|1|A|G|790
5ND9|1|A|U|791
5ND9|1|A|U|792
5ND9|1|A|G|793
5ND9|1|A|A|794
5ND9|1|A|A|795
5ND9|1|A|A|796
5ND9|1|A|A|797
5ND9|1|A|G|798
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain 6
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L22
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