HL_5ND9_026

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGGCCCCUCGGGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|G|924
5ND9|1|A|G|925
5ND9|1|A|G|926
5ND9|1|A|G|927
5ND9|1|A|C|928
5ND9|1|A|C|929
5ND9|1|A|C|930
5ND9|1|A|C|931
5ND9|1|A|U|932
5ND9|1|A|C|935
5ND9|1|A|G|936
5ND9|1|A|G|937
5ND9|1|A|G|938
5ND9|1|A|U|939
5ND9|1|A|A|941
5ND9|1|A|C|942
5ND9|1|A|C|943

Current chains

Chain A

23S ribosomal RNA

Nearby chains