HL_5ND9_038

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5ND9|1|A|A|1658, 5ND9|1|A|A|1660, 5ND9|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_038 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.2472

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

5ND9|1|A|C|1656
5ND9|1|A|G|1657
5ND9|1|A|A|1658
5ND9|1|A|C|1659
5ND9|1|A|A|1660
5ND9|1|A|C|1661
5ND9|1|A|A|1662
5ND9|1|A|G|1663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L22