HL_5ND9_039

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

5ND9|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1807

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5ND9|1|A|A|1673
5ND9|1|A|U|1674
5ND9|1|A|G|1675
5ND9|1|A|A|1676
5ND9|1|A|G|1677
5ND9|1|A|A|1678
5ND9|1|A|A|1679
5ND9|1|A|U|1680
5ND9|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains