HL_5ND9_056

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_056 not in the Motif Atlas

Homologous match to HL_7A0S_057

Geometric discrepancy: 0.2457

The information below is about HL_7A0S_057

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5ND9|1|A|C|2401
5ND9|1|A|G|2402
5ND9|1|A|A|2403
5ND9|1|A|A|2404
5ND9|1|A|A|2405
5ND9|1|A|G|2406

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L18