HL_5ND9_081

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUAACUGU

Length

9 nucleotides

Bulged bases

5ND9|1|a|C|476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3343

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5ND9|1|a|A|471
5ND9|1|a|G|472
5ND9|1|a|U|473
5ND9|1|a|A|474
5ND9|1|a|A|475
5ND9|1|a|C|476
5ND9|1|a|U|477
5ND9|1|a|G|478
5ND9|1|a|U|479

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16