HL_5ND9_106

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

5ND9|1|A|U|2332, 5ND9|1|A|A|2336

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|A|G|2331
5ND9|1|A|U|2332
5ND9|1|A|U|2333
5ND9|1|A|G|2334
5ND9|1|A|G|2335
5ND9|1|A|A|2336
5ND9|1|A|A|2337
5ND9|1|A|A|2338
5ND9|1|A|U|2339

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L5