HL_5NDG_027

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUUGAUG

Length

7 nucleotides

Bulged bases

5NDG|1|1|U|1353, 5NDG|1|1|G|1354, 5NDG|1|1|U|1356

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|1|U|1347
5NDG|1|1|U|1348
5NDG|1|1|U|1353
5NDG|1|1|G|1354
5NDG|1|1|A|1355
5NDG|1|1|U|1356
5NDG|1|1|G|1357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L4

60S ribosomal protein L4-A

Chain L6

60S ribosomal protein L6-A

Chain M8

60S ribosomal protein L18-A

Chain O2

60S ribosomal protein L32