HL_5NDG_032

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCCUGAUGCAGGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|1|G|1561
5NDG|1|1|C|1562
5NDG|1|1|C|1563
5NDG|1|1|U|1564
5NDG|1|1|G|1565
5NDG|1|1|A|1566
5NDG|1|1|U|1572
5NDG|1|1|G|1573
5NDG|1|1|C|1574
5NDG|1|1|A|1575
5NDG|1|1|G|1576
5NDG|1|1|G|1577
5NDG|1|1|C|1578

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A

Chain N5

60S ribosomal protein L25