HL_5NDG_050

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

5NDG|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|1|G|2534
5NDG|1|1|A|2535
5NDG|1|1|A|2536
5NDG|1|1|U|2537
5NDG|1|1|U|2538
5NDG|1|1|C|2539
5NDG|1|1|A|2540
5NDG|1|1|U|2541
5NDG|1|1|U|2542
5NDG|1|1|U|2543
5NDG|1|1|U|2544
5NDG|1|1|C|2545

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L8

60S ribosomal protein L8-A

Chain O4

60S ribosomal protein L34-A

Chain S1

40S ribosomal protein S1-A