HL_5NDG_143
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUGCAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_143 not in the Motif Atlas
- Geometric match to HL_7VTI_001
- Geometric discrepancy: 0.2534
- The information below is about HL_7VTI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
5NDG|1|5|C|1562
5NDG|1|5|C|1563
5NDG|1|5|U|1564
5NDG|1|5|G|1573
5NDG|1|5|C|1574
5NDG|1|5|A|1575
5NDG|1|5|G|1576
5NDG|1|5|G|1577
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l8
- 60S ribosomal protein L8-A
- Chain n5
- 60S ribosomal protein L25
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