HL_5NDG_166

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_166 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.1646

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5NDG|1|5|A|2673
5NDG|1|5|A|2674
5NDG|1|5|C|2675
5NDG|1|5|A|2676
5NDG|1|5|G|2677
5NDG|1|5|A|2678
5NDG|1|5|A|2679
5NDG|1|5|A|2680
5NDG|1|5|U|2681

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain c8

40S ribosomal protein S18-A

Chain m1

60S ribosomal protein L11-A

Chain sM

Suppressor protein STM1