HL_5NDG_200

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

5NDG|1|6|U|779, 5NDG|1|6|U|781, 5NDG|1|6|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_200 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.0958

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

5NDG|1|6|C|777
5NDG|1|6|G|778
5NDG|1|6|U|779
5NDG|1|6|A|780
5NDG|1|6|U|781
5NDG|1|6|U|782
5NDG|1|6|G|783

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A