HL_5NDG_233

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5NDG|1|5|G|1024, 5NDG|1|5|A|1025, 5NDG|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|5|C|1023
5NDG|1|5|G|1024
5NDG|1|5|A|1025
5NDG|1|5|A|1026
5NDG|1|5|A|1027
5NDG|1|5|U|1028
5NDG|1|5|G|1029

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain c5

40S ribosomal protein S15

Chain e1

Ubiquitin-40S ribosomal protein S31

Chain m1

60S ribosomal protein L11-A

Chain sM

Suppressor protein STM1