HL_5NDH_001
3D structure
- PDB id
- 5NDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the G. violaceus guanidine II riboswitch P2 stem-loop
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.81 Å
Loop
- Sequence
- GACGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5NDH|1|A|G|6
5NDH|1|A|A|7
5NDH|1|A|C|8
5NDH|1|A|G|9
5NDH|1|A|A|10
5NDH|1|A|C|11
Current chains
- Chain A
- RNA (5'-R(*GP*(CBV)P*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*GP*C)-3')
Nearby chains
- Chain C
- RNA (5'-R(*GP*(CBV)P*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*GP*C)-3')
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