HL_5NDJ_030

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5NDJ|1|13|A|2077, 5NDJ|1|13|G|2079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_030 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.3754

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5NDJ|1|13|C|2075
5NDJ|1|13|U|2076
5NDJ|1|13|A|2077
5NDJ|1|13|C|2078
5NDJ|1|13|G|2079
5NDJ|1|13|G|2080

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20