HL_5NDJ_060

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

5NDJ|1|14|U|1109, 5NDJ|1|14|A|1115, 5NDJ|1|14|A|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|G|1107
5NDJ|1|14|U|1108
5NDJ|1|14|U|1109
5NDJ|1|14|G|1110
5NDJ|1|14|G|1111
5NDJ|1|14|C|1112
5NDJ|1|14|U|1113
5NDJ|1|14|U|1114
5NDJ|1|14|A|1115
5NDJ|1|14|G|1116
5NDJ|1|14|A|1117
5NDJ|1|14|A|1118
5NDJ|1|14|G|1119
5NDJ|1|14|C|1120
5NDJ|1|14|A|1121
5NDJ|1|14|G|1122
5NDJ|1|14|C|1123
5NDJ|1|14|C|1124
5NDJ|1|14|A|1125
5NDJ|1|14|U|1126
5NDJ|1|14|C|1127

Current chains

Chain 14

23S ribosomal RNA

Nearby chains