HL_5NDJ_061

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

5NDJ|1|14|A|1143, 5NDJ|1|14|A|1144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|14|G|1139
5NDJ|1|14|C|1140
5NDJ|1|14|G|1141
5NDJ|1|14|U|1142
5NDJ|1|14|A|1143
5NDJ|1|14|A|1144
5NDJ|1|14|U|1145
5NDJ|1|14|A|1146
5NDJ|1|14|G|1147
5NDJ|1|14|C|1148

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6