HL_5NDJ_091

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5NDJ|1|14|U|2421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_091 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0681

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5NDJ|1|14|C|2419
5NDJ|1|14|G|2420
5NDJ|1|14|U|2421
5NDJ|1|14|G|2422
5NDJ|1|14|U|2423
5NDJ|1|14|G|2424
5NDJ|1|14|G|2425
5NDJ|1|14|A|2426
5NDJ|1|14|A|2427
5NDJ|1|14|G|2428

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28