HL_5NDJ_106

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

5NDJ|1|1G|U|835, 5NDJ|1|1G|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_106 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1398

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

5NDJ|1|1G|C|832
5NDJ|1|1G|C|833
5NDJ|1|1G|U|834
5NDJ|1|1G|U|835
5NDJ|1|1G|G|836
5NDJ|1|1G|G|837

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 8A

30S ribosomal protein S17