HL_5NDJ_110
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_110 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.0829
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|1G|C|961
5NDJ|1|1G|A|962
5NDJ|1|1G|C|963
5NDJ|1|1G|U|964
5NDJ|1|1G|G|965
5NDJ|1|1G|A|966
5NDJ|1|1G|G|967
5NDJ|1|1G|A|968
5NDJ|1|1G|C|969
5NDJ|1|1G|A|970
5NDJ|1|1G|C|971
5NDJ|1|1G|G|972
5NDJ|1|1G|G|973
5NDJ|1|1G|G|974
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 7A
- 30S ribosomal protein S16
- Chain BA
- 30S ribosomal protein S20
Coloring options: