HL_5NDJ_111

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5NDJ|1|1G|A|985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_111 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1378

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5NDJ|1|1G|C|983
5NDJ|1|1G|U|984
5NDJ|1|1G|A|985
5NDJ|1|1G|C|986
5NDJ|1|1G|G|987
5NDJ|1|1G|G|988

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 75

50S ribosomal protein L19