HL_5NDJ_125

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCCGCGAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_125 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3806

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5NDJ|1|1G|C|1652
5NDJ|1|1G|C|1653
5NDJ|1|1G|C|1654
5NDJ|1|1G|G|1655
5NDJ|1|1G|C|1656
5NDJ|1|1G|G|1657
5NDJ|1|1G|A|1658
5NDJ|1|1G|G|1659
5NDJ|1|1G|G|1660
5NDJ|1|1G|G|1661

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains