HL_5NDJ_156

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGCCCGCACGCGGGCC

Length

16 nucleotides

Bulged bases

5NDJ|1|1H|C|690, 5NDJ|1|1H|C|692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1H|G|684
5NDJ|1|1H|G|685
5NDJ|1|1H|C|686
5NDJ|1|1H|C|687
5NDJ|1|1H|C|688
5NDJ|1|1H|G|689
5NDJ|1|1H|C|690
5NDJ|1|1H|A|691
5NDJ|1|1H|C|692
5NDJ|1|1H|G|693
5NDJ|1|1H|C|694
5NDJ|1|1H|G|695
5NDJ|1|1H|G|696
5NDJ|1|1H|G|697
5NDJ|1|1H|C|698
5NDJ|1|1H|C|699

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15