HL_5NDJ_165

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

5NDJ|1|1H|G|1224, 5NDJ|1|1H|A|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_165 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.363

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5NDJ|1|1H|G|1219
5NDJ|1|1H|G|1220
5NDJ|1|1H|G|1221
5NDJ|1|1H|A|1222
5NDJ|1|1H|U|1223
5NDJ|1|1H|G|1224
5NDJ|1|1H|A|1225
5NDJ|1|1H|C|1226
5NDJ|1|1H|C|1227

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains