HL_5NDJ_170

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5NDJ|1|1H|U|1445, 5NDJ|1|1H|U|1446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_170 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0733

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NDJ|1|1H|G|1438
5NDJ|1|1H|U|1439
5NDJ|1|1H|U|1440
5NDJ|1|1H|A|1441
5NDJ|1|1H|A|1442
5NDJ|1|1H|U|1443
5NDJ|1|1H|A|1444
5NDJ|1|1H|U|1445
5NDJ|1|1H|U|1446
5NDJ|1|1H|C|1447

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23