HL_5NDJ_175

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5NDJ|1|1H|A|1663, 5NDJ|1|1H|A|1665, 5NDJ|1|1H|A|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_175 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0741

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5NDJ|1|1H|C|1661
5NDJ|1|1H|G|1662
5NDJ|1|1H|A|1663
5NDJ|1|1H|C|1664
5NDJ|1|1H|A|1665
5NDJ|1|1H|C|1666
5NDJ|1|1H|A|1667
5NDJ|1|1H|G|1668

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain P8

50S ribosomal protein L34